Why is the carbonyl IR stretch in an ester higher than in a ketone: crystal structure data mining.

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In this post, I pondered upon the C=O infra-red spectroscopic properties of esters, and showed three possible electronic influences:

s-cis-ester1

The red (and blue) arrows imply the C-O bond might shorten and the C=O bond would lengthen; the green the reverse. So time for a search of the crystal structure database as a reality check. The query is as follows:

s-cis-ester1

The response shows the bimodal distribution with as expected the s-cis conformation dominating. There is indeed a hint that for the s-cis, the C-O distance is rather shorter than for the s-trans conformation.

s-cis-ester1

Repeating the search, but specifying that the temperature of data acquisition is < 90K, one gets a much clearer indication of the difference in bond lengths.

s-cis-ester1

This alternative representation shows the C-O and the C=O distances, with red indicating s-trans and blue indicating s-cis conformations (T < 140K). The red dots occupy a bottom right cluster for which the C-O distance is longer and the C=O shorter than the corresponding blue cluster.

s-cis-ester1

Again reducing the temperature of data collection to < 90K shows a rather weak inverse correlation between the two distances for eg the blue dots.

s-cis-ester1

A shame however that this database does not hold IR values for the carbonyl stretches. I am sure correlations must exist, but how to get at them (other than manual collection of data).

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One Response to “
Why is the carbonyl IR stretch in an ester higher than in a ketone: crystal structure data mining.

  1. Henry Rzepa says:

    Here is a plot in which the C=O of the ester is replaced by C=CRR’ (where R or R’ can be either H or a 4-coordinate carbon). In addition the C-O-C= is replaced by R-O-C=, where R can be either 4-coordinate carbon or silicon. This is now an enol rather than an ester.

    The effect is less clear-cut for these enols, largely because there are only 71 examples of crystal structures for such systems. Nevertheless, the red dots (s-trans) are mostly clustered in the bottom right and the blue dots (s-syn) mostly in the top left, just as with the esters.

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