Posts Tagged ‘3g’

Computers 1967-2011: a personal perspective. Part 4. Moore’s Law and Molecules.

Friday, October 28th, 2011

Moore’s law describes a long-term trend in the evolution of computing hardware, and it is often interpreted in terms of processing speed. Here I chart this rise in terms of the size of computable molecules. By computable I mean specifically how long it takes to predict the geometry of a given molecule using a quantum mechanical procedure.


Bio-renewable green polymers: Stereoinduction in poly(lactic acid)

Saturday, July 24th, 2010

Lactide is a small molecule made from lactic acid, which is itself available in large quantities by harvesting plants rather than drilling for oil. Lactide can be turned into polymers with remarkable properties, which in turn degrade down easily back to lactic acid. A perfect bio-renewable material!


The conformational analysis of cyclo-octane

Sunday, January 31st, 2010

In the previous post, I suggested that inspecting the imaginary modes of planar cyclohexane might be a fruitful and systematic way in which at least parts of the conformational surface of this ring might be probed. Here, the same process is conducted for cyclo-octane. The ring starts with planar D8h symmetry, and at this geometry (B3LYP/6-311G(d,p), DOI: 10042/to-3742) five negative force constants (corresponding to imaginary modes) are calculated. The most negative is non-degenerate, and gives directly the crown conformation of D4d symmetry (DOI: 10042/to-3738). The remaining four modes comprise two degenerate pairs. Following either of the E2u eigenvectors downhill leads to another conformation, D2d (DOI: 10042/to-3741), with a geometry which is noteworthy for exhibiting a pair of unusually close non-bonded H…H contacts (1.908Å). This value is about  0.3Å shorter than the sum of the Wan der Waals radii (DOI: 10.1021/jp8111556). We can debate whether such a close approach or inter-penetration of two hydrogens is a bond or not (an AIM analysis appears at the bottom of this post). (more…)