In a previous post, I looked at the Findability of FAIR data in common chemistry journals. Here I move on to the next letter, the A = Accessible.
Posts Tagged ‘Technology/Internet’
The “Accessible” in FAIR (data).
Thursday, April 18th, 2019Tags:Academic publishing, automatic processing, Data management, Digital Object Identifier, EIDR, FAIR data, Findability, Identifiers, Information, Information architecture, Information science, Knowledge, Knowledge representation, metadata, mining, Open Archives Initiative, RDF, Records management, representative, standardized communication protocol, Technical communication, Technology/Internet, Web design, Written communication, XML
Posted in Chemical IT | No Comments »
Questions about the (metadata) components of a scientific article.
Monday, April 8th, 2019The conventional procedures for reporting analysis or new results in science is to compose an “article”, augment that perhaps with “supporting information” or “SI”, submit to a journal which undertakes peer review, with revision as necessary for acceptance and finally publication. If errors in the original are later identified, a separate corrigendum can be submitted to the same journal, although this is relatively rare. Any new information which appears post-publication is then considered for a new article, and the cycle continues. Here I consider the possibilities for variations in this sequence of events.
Tags:Academic publishing, American Chemical Society, author, Business intelligence, Company: DataCite, CrossRef, data, Data management, DataCite, editor, EIDR, Information, Information science, JSON, Knowledge representation, Metadata repository, Records management, Technology/Internet, The Metadata Company
Posted in Chemical IT | No Comments »
“Richer metadata makes content more useful”
Saturday, February 16th, 2019The title of this post comes from the site www.crossref.org/members/prep/ Here you can explore how your favourite publisher of scientific articles exposes metadata for their journal.
Tags:Aaron Swartz, Academic publishing, API, Business intelligence, CrossRef, data, Data management, Elsevier, favourite publisher, Identifiers, Information, Information science, Knowledge, Knowledge representation, metadata, mining, ORCiD, PDF, Pre-exposure prophylaxis, Publishing, Publishing Requirements for Industry Standard Metadata, Records management, Research Object, Scholarly communication, Scientific literature, search engine, social media, Technical communication, Technology/Internet, text mining, Written communication, XML
Posted in Interesting chemistry | 1 Comment »
Re-inventing the anatomy of a research article.
Saturday, December 29th, 2018The traditional structure of the research article has been honed and perfected for over 350 years by its custodians, the publishers of scientific journals. Nowadays, for some journals at least, it might be viewed as much as a profit centre as the perfected mechanism for scientific communication. Here I take a look at the components of such articles to try to envisage its future, with the focus on molecules and chemistry.
Tags:Academic publishing, Acrobat, Articles, chemical discoveries, data, Data management, ELN, Information, Molecules, Narrative, PDF, Publishing, Research, Scholarly communication, Science, Scientific Journal, Scientific method, Technical communication, Technology/Internet, Web browser
Posted in Chemical IT | No Comments »
Open Access journal publishing debates – the elephant in the room?
Sunday, November 4th, 2018For perhaps ten years now, the future of scientific publishing has been hotly debated. The traditional models are often thought to be badly broken, although convergence to a consensus of what a better model should be is not apparently close. But to my mind, much of this debate seems to miss one important point, how to publish data.
Tags:Academia, Academic publishing, American Chemical Society, Angewandte Chemie, article processing charge, article processing charges, artificial intelligence, Cognition, Company: RSC, Electronic publishing, G factor, Hybrid open access journal, Knowledge, Michael Dewar, Nature, online era, Open access, Predatory publishing, Publishing, researcher, Royal Society of Chemistry, Scholarly communication, Science, Technology/Internet
Posted in Chemical IT | 2 Comments »
A Theoretical Method for Distinguishing X‐H Bond Activation Mechanisms.
Wednesday, July 25th, 2018Consider the four reactions. The first two are taught in introductory organic chemistry as (a) a proton transfer, often abbreviated PT, from X to B (a base) and (b) a hydride transfer from X to A (an acid). The third example is taught as a hydrogen atom transfer or HAT from X to (in this example) O. Recently an article has appeared[cite]10.1002/anie.201805511[/cite] citing an example of a fourth fundamental type (d), which is given the acronym cPCET which I will expand later. Here I explore this last type a bit further, in the context that X-H bond activations are currently a very active area of research.
Tags:chemical reactions, Chemistry, Deprotonation, Hydride, Hydrogen, Hydrogen atom abstraction, Proton, proton travel, Proton-coupled electron transfer, Technology/Internet
Posted in Interesting chemistry | No Comments »
FAIR Data in Amsterdam – FAIR data points.
Wednesday, July 18th, 2018FAIR is one of those acronyms that spreads rapidly, acquires a life of its own and can mean many things to different groups. A two-day event has just been held in Amsterdam to bring some of those groups from the chemical sciences together to better understand FAIR. Here I note a few items that caught my attention.
Tags:Acronym, Amsterdam, chemical sciences, City: Amsterdam, Queen Mary University of London, spectroscopy, Technology/Internet, text editor, University of London, visualisation tools
Posted in Interesting chemistry | 3 Comments »
Ten years on: Jmol and WordPress.
Wednesday, May 16th, 2018Ten years are a long time when it comes to (recent) technologies. The first post on this blog was on the topic of how to present chemistry with three intact dimensions. I had in mind molecular models, molecular isosurfaces and molecular vibrations (arguably a further dimension). Here I reflect on how ten years of progress in technology has required changes and the challenge of how any necessary changes might be kept “under the hood” of this blog.
Tags:Ajax, Computer programming, computing, Cross-platform software, HTML, Java, Java applet, Java technology, JavaScript, JavaScript libraries, jmol, JQuery, NPAPI, Scientific Journal, Software engineering, Technology/Internet, web browser behaviour, web browsers, Web-page security
Posted in Interesting chemistry | 6 Comments »
Examples please of FAIR (data); good and bad.
Sunday, May 6th, 2018The site fairsharing.org is a repository of information about FAIR (Findable, Accessible, Interoperable and Reusable) objects such as research data.
Tags:above site, chemical components, Findability, Human behavior, Information, Information architecture, Information science, Institutional repository, journal data editor, Knowledge, Knowledge representation, Open access, Open access in Australia, Oscar, PDF, recognition software, Technology/Internet, Web design
Posted in Interesting chemistry | 2 Comments »
How FAIR are the data associated with the 2017 Molecules-of-the-Year?
Wednesday, March 7th, 2018C&EN has again run a vote for the 2017 Molecules of the year. Here I take a look not just at these molecules, but at how FAIR (Findable, Accessible, Interoperable and Reusable) the data associated with these molecules actually is.
Tags:Carotenoids, Chemistry, Epoxides, Macrocycles, Organic chemistry, Organofluorides, PDF, Peptides, search engine, search program, search.datacite.org search engine, Technology/Internet
Posted in Chemical IT, crystal_structure_mining, Interesting chemistry | No Comments »