<?xml version="1.0" encoding="UTF-8"?><rss version="2.0"
	xmlns:content="http://purl.org/rss/1.0/modules/content/"
	xmlns:dc="http://purl.org/dc/elements/1.1/"
	xmlns:atom="http://www.w3.org/2005/Atom"
	xmlns:sy="http://purl.org/rss/1.0/modules/syndication/"
		>
<channel>
	<title>Comments on: The Sn2 reaction and the anomaly of carbon.</title>
	<atom:link href="http://www.ch.imperial.ac.uk/rzepa/blog/?feed=rss2&#038;p=7580" rel="self" type="application/rss+xml" />
	<link>http://www.ch.imperial.ac.uk/rzepa/blog/?p=7580</link>
	<description>Chemistry with a twist</description>
	<lastBuildDate>Wed, 22 May 2013 12:37:04 +0000</lastBuildDate>
	<sy:updatePeriod>hourly</sy:updatePeriod>
	<sy:updateFrequency>1</sy:updateFrequency>
	<generator>http://wordpress.org/?v=3.5.1</generator>
	<item>
		<title>By: The Sn2 reaction: followed up. &#171; Henry Rzepa</title>
		<link>http://www.ch.imperial.ac.uk/rzepa/blog/?p=7580&#038;cpage=1#comment-10781</link>
		<dc:creator>The Sn2 reaction: followed up. &#171; Henry Rzepa</dc:creator>
		<pubDate>Wed, 12 Sep 2012 09:49:25 +0000</pubDate>
		<guid isPermaLink="false">http://www.ch.imperial.ac.uk/rzepa/blog/?p=7580#comment-10781</guid>
		<description><![CDATA[[...] Henry Rzepa Chemistry with a twist      &#171; The Sn2 reaction and the anomaly of carbon. [...]]]></description>
		<content:encoded><![CDATA[<p>[...] Henry Rzepa Chemistry with a twist      &laquo; The Sn2 reaction and the anomaly of carbon. [...]</p>
]]></content:encoded>
	</item>
	<item>
		<title>By: Nicolas</title>
		<link>http://www.ch.imperial.ac.uk/rzepa/blog/?p=7580&#038;cpage=1#comment-10535</link>
		<dc:creator>Nicolas</dc:creator>
		<pubDate>Thu, 06 Sep 2012 19:30:14 +0000</pubDate>
		<guid isPermaLink="false">http://www.ch.imperial.ac.uk/rzepa/blog/?p=7580#comment-10535</guid>
		<description><![CDATA[Thank you for your clarifications.]]></description>
		<content:encoded><![CDATA[<p>Thank you for your clarifications.</p>
]]></content:encoded>
	</item>
	<item>
		<title>By: Henry Rzepa</title>
		<link>http://www.ch.imperial.ac.uk/rzepa/blog/?p=7580&#038;cpage=1#comment-10533</link>
		<dc:creator>Henry Rzepa</dc:creator>
		<pubDate>Thu, 06 Sep 2012 16:01:46 +0000</pubDate>
		<guid isPermaLink="false">http://www.ch.imperial.ac.uk/rzepa/blog/?p=7580#comment-10533</guid>
		<description><![CDATA[Yes, I deliberately did not comment on what the  sodium cation was doing, wondering if anyone would spot it.  It only took a few minutes for you to do so.

I actually started the TS location with the  Na+ in the middle,  but it gradually moved to one side, and so the system ended up unsymmetrical. I guess it gets more dipole stabilisation there than in the middle (much like the carbon in a sense also prefers an unsymmetrical equilibrium position). In this regard, it is simple to simple MO perturbation theory  (the Kloopman-Salem equation), where one large and one small pairwise overlap is generally more stable than two medium overlaps. 

A better model would be to include say another  NaBr molecule, and perhaps a few explicit solvent molecules. Ionic reactions are certainly ones where the density of states is high;  and many (almost equivalent) arrangements of the atoms are possible.  So a true analysis would have to be a statistical one.  But in fact, removing the  Na, and computing a system with an overall charge of  -1 reveals almost exactly the same behaviour, so in this case, the  exact location of the counter-ion may not be crucial.]]></description>
		<content:encoded><![CDATA[<p>Yes, I deliberately did not comment on what the  sodium cation was doing, wondering if anyone would spot it.  It only took a few minutes for you to do so.</p>
<p>I actually started the TS location with the  Na+ in the middle,  but it gradually moved to one side, and so the system ended up unsymmetrical. I guess it gets more dipole stabilisation there than in the middle (much like the carbon in a sense also prefers an unsymmetrical equilibrium position). In this regard, it is simple to simple MO perturbation theory  (the Kloopman-Salem equation), where one large and one small pairwise overlap is generally more stable than two medium overlaps. </p>
<p>A better model would be to include say another  NaBr molecule, and perhaps a few explicit solvent molecules. Ionic reactions are certainly ones where the density of states is high;  and many (almost equivalent) arrangements of the atoms are possible.  So a true analysis would have to be a statistical one.  But in fact, removing the  Na, and computing a system with an overall charge of  -1 reveals almost exactly the same behaviour, so in this case, the  exact location of the counter-ion may not be crucial.</p>
]]></content:encoded>
	</item>
	<item>
		<title>By: Nicolas</title>
		<link>http://www.ch.imperial.ac.uk/rzepa/blog/?p=7580&#038;cpage=1#comment-10532</link>
		<dc:creator>Nicolas</dc:creator>
		<pubDate>Thu, 06 Sep 2012 15:49:53 +0000</pubDate>
		<guid isPermaLink="false">http://www.ch.imperial.ac.uk/rzepa/blog/?p=7580#comment-10532</guid>
		<description><![CDATA[Hello,

The fact that the IRC is not symmetrical may seem confusing. Do you think it is because of the Na+ position (being closer to one bromine than to the other)?

Nicolas]]></description>
		<content:encoded><![CDATA[<p>Hello,</p>
<p>The fact that the IRC is not symmetrical may seem confusing. Do you think it is because of the Na+ position (being closer to one bromine than to the other)?</p>
<p>Nicolas</p>
]]></content:encoded>
	</item>
</channel>
</rss>

<!-- Performance optimized by W3 Total Cache. Learn more: http://www.w3-edge.com/wordpress-plugins/

 Served from: www.ch.imperial.ac.uk @ 2013-05-25 01:32:51 by W3 Total Cache -->